rs239289508 SNP Detail

Summary

• ID
  rs239289508
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:86414913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCATCAA AAGAGGAAAA
  GCAGGGTAAG AAGGCCAAAT GTGTACACTG CCAAGTCTCT GTGTGCCTGT GATGGGGGAG
  GGGGGTGTAG AATGACAACA TGTTAAGAGT TAGGAACGAT CTATCTACAC ACACACACAC
  ACACACACAC ACACACACAC ACACACATAC ACACACACAC CACATCTTTG ATTCTTAAGG
  R
  TAGATGGATG GCCTGGACAA AGTATAAAGT GGTGCAATTT ATAATTCCAT AAAACTTAAT
  GTCAGGACTC AGATAATATT TTTCTTTTTC TGAGAATAAT CTTTAGGCAT CAATACTTCA
  GCTCCTGTCA TGTTCTTTAG ATGACTGAAT TATACCCGCA ATTTCTTTTC CCGAAGTTAG
  TTTTAAGTGG AAATGGGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401532384	MGP_WTSI_18_86566180	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239289508					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401532384	MGP_WTSI_18_86566180	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:86414913 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10353	CpG island 10353	689 bp distal
Neto1	neuropilin (NRP) and tolloid (TLL)-like 1	within coordinates
Rr542241	regulatory region 542241	1826 bp distal
Rr542242	regulatory region 542242	1246 bp distal
Tg(Ddx4-cre)1Dcas	transgene insertion 1, Diego H Castrillon	within coordinates
Tssr152243	transcription start site region 152243	1985 bp downstream
Tssr152244	transcription start site region 152244	1925 bp downstream
Tssr152245	transcription start site region 152245	1859 bp downstream
Tssr152246	transcription start site region 152246	1820 bp downstream
Tssr152247	transcription start site region 152247	1775 bp downstream
Tssr152248	transcription start site region 152248	1555 bp downstream
Tssr152249	transcription start site region 152249	1503 bp downstream
Tssr152250	transcription start site region 152250	1225 bp downstream