rs239290883 SNP Detail

Summary

• ID
  rs239290883
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122518344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGCTGCA GCCTGTGGCT
  ACCGTTCTCC TGCCCCTGCA GAGCCTGCAG CATGCTGAGC AAGATGAGGA TGGTAGCTGG
  CGGGGACAGG ACAGTGTCAC TCTGGCTCCT GGGCACACCA CGTGTCATGA GTTTTAACTG
  AGATCCAGCC TAGCCTCAGA AGACACACTT TTTTCCAGGG TGAAGGGAAA TCGTTCCTGA
  Y
  ACCCAAGGCC CTTGGTGCCT GCAACATGGC TGTACAGCTG TTGAGCACTG AGTCCTGCAC
  GTTGCAGACT CACTCTTGCA CATATGGAGG GAGTCCCAAA GTCTCACACA CACACACACA
  CACACACACA CACACACACC AGGCAGCAGC ACAGAGCATC GGCTGACTGG TCATGATGGT
  GGTGGTGGTG GTCAGAAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322844727	CHEV_8_124315505	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239290883					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122518344 () rs orientation: forward

Symbol	Name	Function Class
Jph3	junctophilin 3	522 bp downstream
Rr671926	regulatory region 671926	554 bp proximal
Tssr79823	transcription start site region 79823	726 bp upstream
Tssr79824	transcription start site region 79824	844 bp upstream
Tssr79825	transcription start site region 79825	873 bp upstream
Tssr83237	transcription start site region 83237	579 bp downstream
Tssr83238	transcription start site region 83238	595 bp downstream
Tssr83239	transcription start site region 83239	609 bp downstream
Tssr83240	transcription start site region 83240	657 bp downstream
Tssr83241	transcription start site region 83241	730 bp downstream