rs239292685 SNP Detail

Summary

• ID
  rs239292685
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:15539163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACAAAGC TAAGTCAAAA
  GGTTCAGACA AATTAAGGAG AGAAACTGAG GCACAGTTCC CTGGGTCGCT GGAAGCAGCA
  GTCCGGCCGG CCATCTCCTT GCTAGCTGCA GCCTAGGGGA GGGACAGGGC CTGGGTACAG
  GGAGTCCACC TGTTACCTGT ACTGCTGTCT GGAGAGGTCT GCCCTGGCCT GGGCTGCGGG
  K
  CCCGCCCGCA GTGCCCGCCC GCCCAGCGCA GTTGGCGGCT GGTTCCCAGT GGGTTGCCAT
  GGAGACGCGG CCTCCGCACC AGTCCGCTTC CTTCTAGCGG GAACTCCCCA GCACTGGCGC
  GGCCAGGTCA GTCCTCAGCC CGCCCAACCC GCTTAGCTGC GGCCCGCGGC TACCCAGAGG
  CGCGAGAGAA ACGCGGGAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376737719	MGP_WTSI_9_15432311	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239292685					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376737719	MGP_WTSI_9_15432311	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:15539163 () rs orientation: forward

Symbol	Name	Function Class
4930540M03Rik	RIKEN cDNA 4930540M03 gene	within coordinates
Cpgi21372	CpG island 21372	within coordinates
Deup1	deuterosome assembly protein 1	within coordinates
Rr674358	regulatory region 674358	within coordinates
Rr674359	regulatory region 674359	26 bp proximal
Rr674360	regulatory region 674360	79 bp proximal
Tssr83870	transcription start site region 83870	58 bp upstream
Tssr88249	transcription start site region 88249	33 bp upstream
Tssr88250	transcription start site region 88250	16 bp upstream
Tssr88251	transcription start site region 88251	3 bp downstream
Tssr88252	transcription start site region 88252	30 bp downstream
Tssr88253	transcription start site region 88253	43 bp downstream
Tssr88254	transcription start site region 88254	416 bp downstream
Tssr88255	transcription start site region 88255	459 bp downstream