rs239293846 SNP Detail

Summary

• ID
  rs239293846
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:52258000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCCACGAA GGCCTTGTCG AACTCCTTCT
  CCAGCACCTC AAGCCATCGG AACATGGACA CCCCGCCAGG GGAGACCCCC ACAGGGCAGG
  AGGAGCCCCC TGGGCCGCCG CCGGCTCCCG CCGGGCATGG GCCACCCGCC GACATGGCGC
  Y
  GTCCAGGGCC TCGCCGACTG CTGCTCACTC TGGCCGCCCG CCCCGCGCGA GGGGAACTGC
  TAGCAccgcg gcgccccccg cgcgcgcgca cacacagaca cacacgcaca cacacacaga
  cacacacCCG CCGGTCCCCT CCCTTCCCTC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323303495	CHEV_10_52101710	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239293846					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:52258000 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1535	CpG island 1535	within coordinates
Gm47580	predicted gene, 47580	678 bp upstream
Gm67152	predicted gene, 67152	365 bp upstream
Gopc	golgi associated PDZ and coiled-coil motif containing	within coordinates
Rr431353	regulatory region 431353	161 bp proximal
Rr431354	regulatory region 431354	376 bp proximal
Tssr93299	transcription start site region 93299	405 bp downstream
Tssr97576	transcription start site region 97576	17 bp downstream
Tssr97577	transcription start site region 97577	52 bp downstream
Tssr97578	transcription start site region 97578	170 bp downstream