rs239295542 SNP Detail

Summary

• ID
  rs239295542
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:19060378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACGTACTGT GCTGACTACT
  CAAGGTGCAC GTGAGTTTTG CTGAGGCTCC CAGGGAGAAA GAGGCTGAAG ATGACTGAGT
  GAGCACAAGT TGGGAGAAAG AACCTGAAAA TAGAGAAACT GTTTATTTCC TGACATTACA
  GACAGATATA GAATGTATCT GCCTCTCAGA TGAACTGAGG TTCAGGGTAC AAATGGTTCT
  C
  CTGACCTGAG CAATGAAGAA CAAAGAAGAA GAAGAGAGGA GTCCAGGCCA TAATGCAGGT
  ACTACTGATC TCTGCTGAGA CAGACAGGTT GTAGTTCTCT CTTATCCTTC AAAATTCTCA
  GAGAAATGAG AGGGCCCTTC ATGCAAATTT TATTGGCCAA ACAAATCTTG TTTCAGGTGT
  GTGTGCTATC AAATGTCTGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395552143	MGP_WTSI_16_19241721	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239295542					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395552143	MGP_WTSI_16_19241721	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:19060378 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A530030E21Rik	RIKEN cDNA A530030E21 gene			1897 bp upstream
Gm35545	predicted gene, 35545			294 bp downstream
Gm56600	predicted gene, 56600			within coordinates
Iglv3	immunoglobulin lambda variable 3			Intron
				Splice-Site
Rr512770	regulatory region 512770			within coordinates
Tssr137404	transcription start site region 137404			369 bp downstream
Tssr137405	transcription start site region 137405			344 bp downstream
Tssr140323	transcription start site region 140323			520 bp upstream
Tssr140324	transcription start site region 140324			67 bp downstream
Tssr140325	transcription start site region 140325			84 bp downstream
Tssr140326	transcription start site region 140326			179 bp downstream