rs239298026 SNP Detail

Summary

• ID
  rs239298026
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58780912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTGTTCT CAACTGTCAG
  AGAGAAGGGC TCTTAGACAT AGAATTTCAG GGCTAGATCC TCAGTAGGGC AGGTGCTTGG
  CCTCCCTGTA TGAGAGAGAC ACAGGAAGGA GTGAGAAAAA TGAGAACCAC CCTTGTGGGA
  GACTTGGGGA AGCCCAACTT GGGAAGGACA AAGCCCCAAC TTCTGCACTG CTTGTCTGTC
  Y
  TCAATCACTA TGTGTGTTCT TACCTACAAA CCACTCAGTG GGTGTTAAAT GCTTCTGGTA
  TGCCTAGCAG GTCCTGAAAG ATCTGGCCTA AGTGATTTCT CCTCAATTAA TCCAAAGCTA
  GCTGTCACCT TCTTGCAGCA CTGGGTGCCT TCAATGTGTG TCTTAAAAGC TGAAGTACTT
  GCACTAGCCC AGTTAGACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402926278	MGP_WTSI_19_58866970	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239298026					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402926278	MGP_WTSI_19_58866970	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58780912 () rs orientation: forward

Symbol	Name	Function Class
Gm17150	predicted gene 17150	1905 bp downstream
Gm56672	predicted gene, 56672	within coordinates
Rr550522	regulatory region 550522	1971 bp proximal
Spmip5	sperm microtubule inner protein 5	within coordinates
Tssr159974	transcription start site region 159974	314 bp downstream
Tssr159975	transcription start site region 159975	337 bp downstream
Tssr159976	transcription start site region 159976	788 bp downstream
Tssr159977	transcription start site region 159977	797 bp downstream
Tssr159978	transcription start site region 159978	820 bp downstream
Tssr159979	transcription start site region 159979	1920 bp downstream
Tssr159980	transcription start site region 159980	1956 bp downstream