rs239304724 SNP Detail

Summary

• ID
  rs239304724
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:34549952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAATCTTG GTGGAGAGCT
  AGCATCCACA GGCAGAAGAT ATAAAGTATC TACATAAATT ACTTCATCAG TGCTGTAGTC
  GATCCCTATT TTAGATAGTT GATGAAAAAA CAAATTTTAG AAATATTTCT TCCCACTTTG
  CTAATAAAGA TGGGTCCTGC TCCCTAGGCA TTTATTTGCT TGCCTTTCCC TAGACCCCAC
  Y
  CAGCCTTCCA AACTCAACAA ATTTCTGGTG TTGATCGCTC TCTGCTCATA GTAAACAATT
  GACTTTGTGC TCCTTTTCAG CTATGCAGAA TTTAATAAGC AAACAAGTAC CTATCTGGGA
  AGCGCAAAGC ACAGACTTCA AAGATCCTGT AATCTGATAT TATTACTGTC GTTCTGTCTC
  GAGGACCCAA ATTGGTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss361140643	MGP_WTSI_4_34497201	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs239304724					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361140643	MGP_WTSI_4_34497201	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:34549952 () rs orientation: forward

Symbol	Name	Function Class
Akirin2	akirin 2	985 bp upstream
Cpgi14119	CpG island 14119	465 bp proximal
Gm68522	predicted gene, 68522	674 bp upstream
Gm70378	predicted gene, 70378	within coordinates
Rr100806	regulatory region 100806	within coordinates
Rr367598	regulatory region 367598	293 bp upstream
Tssr36766	transcription start site region 36766	635 bp upstream
Tssr36767	transcription start site region 36767	725 bp upstream
Tssr36768	transcription start site region 36768	948 bp upstream
Tssr36769	transcription start site region 36769	966 bp upstream
Tssr36770	transcription start site region 36770	979 bp upstream
Tssr41190	transcription start site region 41190	1485 bp downstream