rs239305466 SNP Detail

Summary

• ID
  rs239305466
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152102185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCGCGCGG GGCTCACGTG
  ACGGCCACGT GACCGGAGGC CAGGCCGGCT GAGGGCTAGC GCGGTCCTCC GTGGCGTCCG
  GAGGGCGGCA GAGGGCTGAG TTTGGCGTCC CGCCTTTCCT TCTCCCCTCA GACGACTCAG
  AGGAGGAATC CAGGGCGGGG AAGGCTTGCC TCTCCTCCCG TTTGCCCGCG GCCTCCCAGT
  R
  CGAGGACGAA CCACACGTTC AAAGTCCCGA AGTAGTGATT AGCTTCCCCC ACGCCGCCAT
  GTTGGCTCCA GCGCACGCCC GCCCGCGAGA TGCCAGCGGG TCGGTATCGC GAGATCTCCG
  GACTCTCGCG GGACCTGGTT GGCAGAGCGG TTGCGCTGGA TGGCGGAGCC CCGGGTTCTC
  GGGGCCCTGG GACCAGTAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028816	CHEV_3_152059512	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239305466					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152102185 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13949	CpG island 13949	1786 bp distal
Cpgi13950	CpG island 13950	within coordinates
Gm66519	predicted gene, 66519	1871 bp upstream
Rr77388	regulatory region 77388	within coordinates
Tssr32410	transcription start site region 32410	1059 bp downstream
Tssr32411	transcription start site region 32411	489 bp downstream
Tssr32412	transcription start site region 32412	466 bp downstream
Tssr32413	transcription start site region 32413	154 bp downstream
Tssr32414	transcription start site region 32414	116 bp upstream
Zzz3	zinc finger, ZZ domain containing 3	within coordinates