rs239305466 SNP Detail

Summary

• ID
  rs239305466
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152102185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCGCGCGG GGCTCACGTG
  ACGGCCACGT GACCGGAGGC CAGGCCGGCT GAGGGCTAGC GCGGTCCTCC GTGGCGTCCG
  GAGGGCGGCA GAGGGCTGAG TTTGGCGTCC CGCCTTTCCT TCTCCCCTCA GACGACTCAG
  AGGAGGAATC CAGGGCGGGG AAGGCTTGCC TCTCCTCCCG TTTGCCCGCG GCCTCCCAGT
  R
  CGAGGACGAA CCACACGTTC AAAGTCCCGA AGTAGTGATT AGCTTCCCCC ACGCCGCCAT
  GTTGGCTCCA GCGCACGCCC GCCCGCGAGA TGCCAGCGGG TCGGTATCGC GAGATCTCCG
  GACTCTCGCG GGACCTGGTT GGCAGAGCGG TTGCGCTGGA TGGCGGAGCC CCGGGTTCTC
  GGGGCCCTGG GACCAGTAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028816	CHEV_3_152059512	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239305466					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152102185 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13949	CpG island 13949			1786 bp distal
Cpgi13950	CpG island 13950			within coordinates
Gm66519	predicted gene, 66519			1871 bp upstream
Rr587542	regulatory region 587542			1065 bp distal
Rr587543	regulatory region 587543			406 bp distal
Rr587544	regulatory region 587544			626 bp distal
Rr587545	regulatory region 587545			566 bp distal
Rr587546	regulatory region 587546			477 bp distal
Rr587547	regulatory region 587547			within coordinates
Rr587548	regulatory region 587548			287 bp distal
Rr587549	regulatory region 587549			252 bp distal
Rr587550	regulatory region 587550			149 bp proximal
Rr587551	regulatory region 587551			157 bp proximal
Rr587552	regulatory region 587552			1149 bp proximal
Tssr32410	transcription start site region 32410			1059 bp downstream
Tssr32411	transcription start site region 32411			489 bp downstream
Tssr32412	transcription start site region 32412			466 bp downstream
Tssr32413	transcription start site region 32413			154 bp downstream
Tssr32414	transcription start site region 32414			116 bp upstream
Zzz3	zinc finger, ZZ domain containing 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant