rs239305592 SNP Detail

Summary

• ID
  rs239305592
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:114392470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGAGGCGA CCCCTGGGCC
  ACCTCGGCAG GGCGGGTTTG CACTGCTACT CCTCAGCAAA CGAGCGCCCG CACAAGTCTC
  AAAGTCCGCC GTGGAATCCG GTCCCCGCGG CGCAAACCAA TTTGGTCCCA ACGAGTCTTG
  CTTGTGTTGT TTTTTTTTTT TCCTTGCCCT CCGGCTAAAT GAATTGAGCC TCCTGGAGGG
  W
  GGGGAAAACG TCCGGGAGTC GCAGCAGTCC AAGTCCCCGC GCGCGCCGCC GGCCGCCCCG
  CCGCATGACG CGGCGGCAGG AGCTCCTGCG TGGCGGCCGA GGCGCAGCCT CCCCCGCGGC
  GCGGTCGGCT CGGGCGCGCA GCTGCGCCTC GTGCGGGGGC CCCCGGCCCG CGGAAGCACG
  CGTGCCAAGT ACGCACGCGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss379005643	MGP_WTSI_9_114472520	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs239305592					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379005643	MGP_WTSI_9_114472520	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:114392470 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22423	CpG island 22423	1701 bp distal
Cpgi22424	CpG island 22424	within coordinates
Rr383952	regulatory region 383952	258 bp upstream
Rr687643	regulatory region 687643	1640 bp distal
Rr687644	regulatory region 687644	957 bp proximal
Trim71	tripartite motif-containing 71	within coordinates
Tssr91844	transcription start site region 91844	149 bp upstream
Tssr91845	transcription start site region 91845	119 bp upstream
Tssr91846	transcription start site region 91846	99 bp upstream
Tssr91847	transcription start site region 91847	684 bp downstream
Tssr91848	transcription start site region 91848	795 bp downstream
Tssr91849	transcription start site region 91849	886 bp downstream
Tssr91850	transcription start site region 91850	913 bp downstream
Tssr91851	transcription start site region 91851	936 bp downstream