rs239305630 SNP Detail

Summary

• ID
  rs239305630
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30354450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAACAAGA AATCAACTCA
  ATCAATAAAT AGTCTAATGA AATGTGCAAT CCACAAAAGA TGAAATATAA GTGATTGATA
  AAGTACAAGG AAGTGCTCAA CCTCAGAGAA ATCTTAATTA AAAACTACAT TGAGGGGGCT
  GGAGAGATGG CTCAGTGGTT AAGAGCACTG ACTGCTCTTC CAAAGGTCCC GAGTTCAAAT
  M
  CCAGCAACCA CATGGTGGCT CACAACCATC CGTAATGAGA TCTGACGCCC TCTTCTGGTG
  CATCTGGAGA CAGCTACAGT GTACTTAGAT ATAATAATAA ATAAATCTTT TAAAAAAAGA
  TTTACACACA CACACACACA CACACACACA CACACAAACA CACACACAAA CACAGAGAGA
  GGCAGAGACA GACAGAGAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395817844	MGP_WTSI_16_30535718	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	C	C	A	A	C	A	A	C	A	A	C	A	A	A	A	C	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239305630					SNP	C	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	C	C	A	A	C	A	A	C	A	A	C	A	A	A	A	C	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395817844	MGP_WTSI_16_30535718	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30354450 () rs orientation: forward

Symbol	Name	Function Class
Rr514267	regulatory region 514267	234 bp distal
Rr514268	regulatory region 514268	42 bp proximal
Tmem44	transmembrane protein 44	within coordinates
Tssr137879	transcription start site region 137879	434 bp upstream