rs239309249 SNP Detail

Summary

• ID
  rs239309249
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:32304163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATATACC AAGTCTTTCC
  TGATTGCTTA CATTCTGTGG TATCCAATAC TCACTCGATA ACTCTTGCTG AGCCACAGTG
  GCCAAGATGA GAGTGGTGAG AACACAGTGG GGCCCCACAA GCAAAGGATA GTGCCACATT
  GTCTGAACAC CAGCTTCGGA GACCCTCCTA GTTGGTCCCT TTCCTTAGCT GGCTCAGGTT
  R
  CAACCAATCA TCCAAGCTGC TTCAAAAGGG GATAGGGAAG AAAGCCAAAG TCGGGGAGTG
  AAGAGCCAGA GAGAGCAGGC AGGGCGTGGG GAGGGGTAGG AGCCAGGCAG CTGAGTTTGC
  ATGCCAGCAA GCAATCTCTC AGAGTAGGAG AATCTGACTC CTGGGAAAGA CTGTGATCTG
  TTTTCCCTCC AGACTGGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321777565	CHEV_6_32277228	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239309249					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32304163 () rs orientation: forward

Symbol	Name	Function Class
Plxna4	plexin A4	Intron
Rr628093	regulatory region 628093	within coordinates
Rr628094	regulatory region 628094	759 bp proximal
Rr628095	regulatory region 628095	1052 bp proximal