rs239310197 SNP Detail

Summary

• ID
  rs239310197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92108822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAAAATGC CCTGTTGGAT
  CATTTCCCAG TGTACAGAAA CATGCTGTAA CACAGCTTTC AGCAAAACAG CCACATTTTT
  GCTCTCCTTG GCAATAAAAA TCCAAAAATC CTCTATGCTA TTTTCAGTAA GCACTCCAAG
  GAAGCTTTAC CCTGAATACT TCCATTGGCA CTTTTCTTGT CAAGATCAAC AGCGACCTTC
  Y
  CCTGGCCAAA GCAAAAGCCA GCTGTCACTC CTTATCTTGC TTGCACAGCT ACACTTGATC
  TAGTAGATGA CTTACTCCTT GAAACACCTC AGCTGGCCTC TCCTATTAAG AAAGAGGAAG
  AGGGAACAGA AAAACAATGC TTGGACACTC AGAGAAAAAG ATTTTAAGTG TTGTGAAACA
  CAAATTTGGT TGTGCAATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365873121	MGP_WTSI_5_92389989	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239310197					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365873121	MGP_WTSI_5_92389989	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92108822 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16049	CpG island 16049	1467 bp proximal
Rchy1	ring finger and CHY zinc finger domain containing 1	within coordinates
Rr367874	regulatory region 367874	389 bp upstream
Rr614524	regulatory region 614524	within coordinates
Rr614525	regulatory region 614525	1250 bp proximal
Rr614526	regulatory region 614526	1950 bp proximal
Tssr47269	transcription start site region 47269	1462 bp upstream
Tssr47270	transcription start site region 47270	1477 bp upstream
Tssr47271	transcription start site region 47271	1503 bp upstream
Tssr47272	transcription start site region 47272	1912 bp upstream
Tssr47273	transcription start site region 47273	1959 bp upstream
Tssr47274	transcription start site region 47274	1981 bp upstream
Tssr51828	transcription start site region 51828	484 bp downstream
Tssr51829	transcription start site region 51829	644 bp downstream
Tssr51830	transcription start site region 51830	1319 bp downstream
Tssr51831	transcription start site region 51831	1352 bp downstream
Tssr51832	transcription start site region 51832	1752 bp downstream
Tssr51833	transcription start site region 51833	1876 bp downstream