rs239316794 SNP Detail

Summary

• ID
  rs239316794
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6164360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAAAGAT TCATACGTTT
  GGGGATTGAG GTGGGACTCC AGTGCATCCA GCCTGTACCT CTAACCTCTA GAGTGGATGC
  TTTAAATCCC TTTTCCCCCT GGCTGTGCTG CTCTTGGATG GAGGAGCTGG GATTCCCATG
  TTTGATTCCA AAGCCCCAGG CTTCTCTGCC TTTCTGTCTG GGCGTGCGAT ACCAGGCAGG
  Y
  TAGCCCCTAG CCCTCAGTTC CTCCTCTGGA GTGGAAGTTC TGAAGCCCAC AGTTCACACC
  GTGGGTACCC AGCTCTCCCA CCGCAAGCCT ACCTCTTCTT TATTCCTCTA GAGCAAGACC
  TCGGCCAGGA TCTACCCCAC CTACCACACA GCATTTGATA CATTTGATTA TGTGGAGAAG
  TTTCTGGACC CTGGTGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401669395	MGP_WTSI_19_6114330	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239316794					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401669395	MGP_WTSI_19_6114330	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6164360 () rs orientation: forward

Symbol	Name	Function Class
Naaladl1	N-acetylated alpha-linked acidic dipeptidase-like 1	within coordinates
Sac3d1	SAC3 domain containing 1	1670 bp downstream
Tssr154574	transcription start site region 154574	1428 bp downstream
Tssr154575	transcription start site region 154575	1416 bp downstream
Tssr154576	transcription start site region 154576	1393 bp downstream
Tssr154577	transcription start site region 154577	1384 bp downstream
Tssr154578	transcription start site region 154578	118 bp upstream
Tssr154579	transcription start site region 154579	128 bp upstream
Tssr154580	transcription start site region 154580	520 bp upstream
Tssr154581	transcription start site region 154581	1240 bp upstream
Tssr154582	transcription start site region 154582	1387 bp upstream