rs239326827 SNP Detail

Summary

• ID
  rs239326827
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101046662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTAGTG AAAATGTTTT
  ACTATGTAAT CCCTGAATTT GAGATTCTCC TAACTTGTGT TCTCAGTGGT GGAATTAGGA
  GTAAGGTACC ACACCCAGGT TAAATCCATT CTTCAAAATT ACCTTTCCAC ATAACACAAA
  TATAAAGGGG TAGTTCAGTA ATTATGTTTA ACTCTTTTCC CTCCTGGGGC GGGGGTGGGG
  G
  GGTGCGGGGA GAGGAATTAC CTGTTCTAAT AAATTAGAAT TTCAAAATTC CAAATGGAAG
  AAAGGGGCTT AGAGGCTATT TCCTAAGTGA TAAAATATAA AAGGGTATAA AACACCAGAC
  TTTTGTTGTA TAGCCCTGGG TGTCCTGGAA CTTTGTAGAC AGGCTGGCTT CAAACTCAGA
  AATCCGCCTG CCTCTGCCTC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SWR/J
ss387112755	MGP_WTSI_12_102318613	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SWR/J
rs239326827					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387112755	MGP_WTSI_12_102318613	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101046662 () rs orientation: forward

Symbol	Name	Function Class
Ppp4r3a	protein phosphatase 4 regulatory subunit 3A	within coordinates
Rr254052	regulatory region 254052	262 bp distal
Rr264939	regulatory region 264939	within coordinates
Rr387703	regulatory region 387703	1809 bp upstream