rs239327648 SNP Detail

Summary

• ID
  rs239327648
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94899834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATCAGGA GTACTCTATC
  TCTCCAGACT CTACTACGCT AAGTCCTGGG CTCTCTCCAA GGTTGCCACC TACTCCTAAA
  CAAGTCATTT CCTTTTTGTG AGTGTGTGGT CTGTGTACCT TAGAGGACAA GAGAAACCCC
  TAACTTAGAG GTTTATTGGG AGGGTGAAGT TAAAGAATCT GAGAAGTACC TGACATACCC
  M
  GAGCCTTGCT CCTCGGTAGC TAGCTGATGA TCACACCCAC CACCTCTGAC CTGCCACCAT
  CTCTGGCTCA CCAAGTCCAA GTCTGAGCTC ATCCACTCCA CGTCCCACCC CTAGCATCAG
  AATTGCCAGG CCCCCAGCCA AGACCCACAG CCAACCTAGA CTCCTCCTTC TCTCTCAGTT
  CTTTGTCTAG CCGGCTCCAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384337404	MGP_WTSI_11_94870322	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239327648					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384337404	MGP_WTSI_11_94870322	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94899834 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3571	CpG island 3571	598 bp proximal
Gm36385	predicted gene, 36385	371 bp downstream
Gm51875	predicted gene, 51875	within coordinates
Gm72634	predicted gene, 72634	within coordinates
Rr454921	regulatory region 454921	1249 bp distal
Rr454922	regulatory region 454922	620 bp distal
Rr454923	regulatory region 454923	314 bp proximal
Rr454924	regulatory region 454924	381 bp proximal
Rr454925	regulatory region 454925	882 bp proximal
Rr454926	regulatory region 454926	1233 bp proximal
Rr454927	regulatory region 454927	1972 bp proximal
Samd14	sterile alpha motif domain containing 14	871 bp upstream
Tssr104328	transcription start site region 104328	756 bp upstream
Tssr104329	transcription start site region 104329	844 bp upstream
Tssr104330	transcription start site region 104330	890 bp upstream
Tssr104331	transcription start site region 104331	928 bp upstream
Tssr104332	transcription start site region 104332	952 bp upstream
Tssr104333	transcription start site region 104333	958 bp upstream
Tssr104334	transcription start site region 104334	1067 bp upstream
Tssr104335	transcription start site region 104335	1092 bp upstream
Tssr104336	transcription start site region 104336	1168 bp upstream
Tssr104337	transcription start site region 104337	1236 bp upstream
Tssr104338	transcription start site region 104338	1269 bp upstream
Tssr104339	transcription start site region 104339	1289 bp upstream
Tssr104340	transcription start site region 104340	1358 bp upstream
Tssr104341	transcription start site region 104341	1376 bp upstream
Tssr104342	transcription start site region 104342	1464 bp upstream
Tssr110238	transcription start site region 110238	1285 bp downstream