rs239332483 SNP Detail

Summary

• ID
  rs239332483
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:51447392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCTACGC CTTTGCCAAG
  CCCGTCCGCA CAAATATTCT CGAACCACAC AAATATTTCT ACACGTCCCA AAGGGGTTCT
  CACTCGGTCC CTCCCAGAAG GACTTTTAGT CCAAGTACCA CCCCGGATGC CACAAGCCTT
  GGGATCCCGC GCCTAGTGAG AGGTGGTGCT TAAAGAACCC CGCTGTTTAT CTCCCCGGCC
  Y
  TCAAGATCCG GGCAAGGAGG TGGGTGGAGC CCCGCTTTGG CGCGCTCCGA GACGCAGAGA
  GGCCTCCGCG GTCCTTCCTG CCCGCCTTCC CCCCCCTCCC CCCAGCCAGG AGACCCCCTG
  GGCGCCACGC CGCGGACGGT GAGCATTGCG CGCGCCGCCC CCCGCAGGAC GCGTTCCCGG
  CGGGCCCCGC GCGGCCAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368292363	MGP_WTSI_6_51420411	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239332483					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368292363	MGP_WTSI_6_51420411	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:51447392 () rs orientation: forward

Symbol	Name	Function Class
Cbx3	chromobox 3	204 bp upstream
Cpgi17402	CpG island 17402	within coordinates
Gm67572	predicted gene, 67572	361 bp downstream
Hnrnpa2b1	heterogeneous nuclear ribonucleoprotein A2/B1	518 bp upstream
Rr379347	regulatory region 379347	within coordinates
Tssr56443	transcription start site region 56443	950 bp downstream
Tssr56444	transcription start site region 56444	195 bp downstream
Tssr56445	transcription start site region 56445	62 bp downstream
Tssr56446	transcription start site region 56446	within coordinates
Tssr56447	transcription start site region 56447	9 bp upstream
Tssr56448	transcription start site region 56448	21 bp upstream
Tssr56449	transcription start site region 56449	82 bp upstream
Tssr56450	transcription start site region 56450	98 bp upstream
Tssr56451	transcription start site region 56451	135 bp upstream
Tssr56452	transcription start site region 56452	196 bp upstream
Tssr56453	transcription start site region 56453	221 bp upstream
Tssr60946	transcription start site region 60946	1943 bp upstream
Tssr60947	transcription start site region 60947	558 bp upstream
Tssr60948	transcription start site region 60948	535 bp upstream
Tssr60949	transcription start site region 60949	617 bp downstream