rs239337906 SNP Detail

Summary

• ID
  rs239337906
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30511776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGAGACA GGTGGTGTTG
  GCTTGTCTAT GTGGCTTCAT CTTATTCTCT CTGGTGGCCT TTCCCCTGGG TTGGTGAATT
  CTTGGTGTCC TTTCATCTTC CTTGAGACTA CAGTAAGATT AAGGCTCCAT CCTCATGGCC
  TGATTGAACC ATCTTTGAGC TCTTGAGGAA TTTTCTAAAG AGACATTTAT TTTGTGTGTG
  R
  TTGTGCCTAC ATGTGAGTGC ACATGTGCCA TACTGAGGGT GTGGAGTCAA TATTCTGCTT
  CCACCTCGTG GGCCCCAAGG ATCGAATGCA GGCCGCATGC CTTGGCATCA TACGCCTTTA
  CCTACTGCTC TCTCTCTTCA ATACTCTTTT CTGGCCTTAT CTCCAAATAC AAGATGGGAC
  TGAAGGTGTC AACATTAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367835035	MGP_WTSI_6_30461777	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239337906					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367835035	MGP_WTSI_6_30461777	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30511776 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17257	CpG island 17257	1845 bp distal
Rr134712	regulatory region 134712	1176 bp distal
Rr146079	regulatory region 146079	1175 bp distal
Rr148899	regulatory region 148899	1826 bp proximal
Rr379134	regulatory region 379134	1076 bp downstream
Ssmem1	serine-rich single-pass membrane protein 1	within coordinates
Tmem209	transmembrane protein 209	1990 bp upstream
Tssr55341	transcription start site region 55341	1929 bp downstream
Tssr55342	transcription start site region 55342	1888 bp downstream
Tssr55343	transcription start site region 55343	506 bp upstream
Tssr55344	transcription start site region 55344	517 bp upstream
Tssr55345	transcription start site region 55345	545 bp upstream
Tssr55346	transcription start site region 55346	563 bp upstream