rs239341052 SNP Detail

Summary

• ID
  rs239341052
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:31081241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCTTCCA CTTATCCACT
  CTCTCCTCTC TGCCTTTCTC TGCCTCCTCT ATTCTCTTAA TTCCCCTCCC CACGCCCTAA
  ATAAACTCTA TTCTATATTA AGAGAGAGAG GAGGAGAGAG GAGGGGAGGG GAGGGGAGGG
  GAGGGGAGGG GAGGGGAGGG GAGGGGAGGG GAGGAGAAAG TAAACTGAGC AAGCCAGTAG
  K
  CAGCACTCCT TCAAGGTCTT TCAGTCCTAC CTCCAGGTCC TGCCCTCCTT CATGAAGGAC
  TGGAAGCTGT GAGGTGAAGT CCCCAGGTTG GTTGTGGTCA CTGTTTTATC ACAGCAGTAG
  AGACCTAACT AAGACTTCTC AGCCCGCTAT CCCTTGCAGC ATATTCAGTA TCAATAAATT
  CTTTGTATTT AGAAAAAAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377096399	MGP_WTSI_9_30977530	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	T	G	T	T	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239341052					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	T	G	T	T	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377096399	MGP_WTSI_9_30977530	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:31081241 () rs orientation: forward

Symbol	Name	Function Class
Aplp2	amyloid beta precursor-like protein 2	within coordinates
Rr675959	regulatory region 675959	1259 bp distal
Tssr88636	transcription start site region 88636	1137 bp upstream
Tssr88637	transcription start site region 88637	1103 bp upstream
Tssr88638	transcription start site region 88638	1026 bp upstream
Tssr88639	transcription start site region 88639	575 bp downstream
Tssr88640	transcription start site region 88640	586 bp downstream
Tssr88641	transcription start site region 88641	598 bp downstream
Tssr88642	transcription start site region 88642	623 bp downstream
Tssr88643	transcription start site region 88643	662 bp downstream