rs239341870 SNP Detail

Summary

• ID
  rs239341870
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:120068331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGG CCAGAGCGAT CGGGCTGACC
  R
  GAGCAAGTGG GATTGACCAG AGCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323509303	CHEV_10_119669482	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239341870					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:120068331 () rs orientation: forward

Symbol	Name	Function Class
Llph	LLP homolog, long-term synaptic facilitation (Aplysia)	mRNA-UTR
Rr385393	regulatory region 385393	1170 bp upstream
Rr402292	regulatory region 402292	247 bp downstream
Rr439960	regulatory region 439960	278 bp distal
Rr439961	regulatory region 439961	498 bp distal
Rr439962	regulatory region 439962	62 bp distal
Rr439963	regulatory region 439963	1284 bp proximal
Rr439964	regulatory region 439964	1748 bp proximal