rs239342118 SNP Detail

Summary

• ID
  rs239342118
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5538866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATCTTAAA GGGGTACAAG
  GAATGAAATA AAGCTAAGGC AGAAGCAGAA AGATCTCGAA ATGTGCCAAG TCGGGGATAT
  TTGTGCACAG AAGACTCAGG CTAGGTGAAT GGCGAAGATG TGTATTTAAT TCCTCCCTTT
  CAAGGAGGAA TAAGAGGTGT ATCCTAGAAG GTGGAGAGTT CGAATGTGGG CACATGGTTG
  R
  ATCCCGGGGA TGCTAGTTAG ACACTTCGCT TCTGTGGCTC ATTAAAAGTG AAGGAGCCTC
  AGGGAGGATG AAGGTGGGAA CCTTGCTGGG GCAGGGATGT CTCAAGCTGA GGGACACAGG
  GCTCAATAGA ACATAGAGGT CCCTTCAGTG TTTGGAACAA CGCACGGTCT TCAGCTGTCA
  CGCTGTCACT CCGGAAGTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401656594	MGP_WTSI_19_5488838	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239342118					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401656594	MGP_WTSI_19_5488838	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5538866 () rs orientation: forward

Symbol	Name	Function Class
1700061A03Rik	RIKEN cDNA 1700061A03 gene	within coordinates
Cfl1	cofilin 1, non-muscle	1617 bp upstream
Cpgi10453	CpG island 10453	468 bp distal
Cpgi10454	CpG island 10454	76 bp proximal
Cpgi10455	CpG island 10455	1415 bp proximal
Gm59148	predicted gene, 59148	348 bp upstream
Mus81	MUS81 structure-specific endonuclease subunit	405 bp upstream
Rr363568	regulatory region 363568	within coordinates
Rr370432	regulatory region 370432	286 bp downstream
Rr405805	regulatory region 405805	161 bp upstream
Rr405806	regulatory region 405806	1335 bp upstream
Tssr154437	transcription start site region 154437	480 bp upstream
Tssr154438	transcription start site region 154438	1637 bp upstream
Tssr154439	transcription start site region 154439	1674 bp upstream
Tssr154440	transcription start site region 154440	1719 bp upstream
Tssr157605	transcription start site region 157605	442 bp upstream
Tssr157606	transcription start site region 157606	103 bp downstream
Tssr157607	transcription start site region 157607	122 bp downstream
Tssr157608	transcription start site region 157608	208 bp downstream
Tssr157609	transcription start site region 157609	239 bp downstream