rs239346912 SNP Detail

Summary

• ID
  rs239346912
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:98832504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCAAGTG TGCTCTGGAC
  CCAAACACAG AGGCACCCAG AGCTCTGGGG ACTTTCCCAC CCTTGCCTTT TCTCCCTAGC
  TTCCTGTCTC CTTGAAAGCC CATCCATTCT TGTTAGCTTC CTGATGGATG AGTTAGGCTT
  GGTAAGCAGA GGCAAAGAAA GGGGTCACGG TGGGGTCAAA AAGGTTTGGG GACTGGTGGA
  K
  TGGGAAGGGT AAGATGGGGG CTCACCAGGG AAGCACATAG CCATGGGGAT GTGGTGGGCA
  CACAGGTCTA GCGGGCCAGA TGTGGGCTTT CTCACAGTCA GGGTGCTCTG AGCATGGGGT
  CTCTAACAAG GCAGACTTAC ATACTGGCTA ATATCAGTAT CCAGCACCCA GCTGGCTCTG
  CAGGGAGTTC CTGCCTTCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389656865	MGP_WTSI_13_99465951	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239346912					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389656865	MGP_WTSI_13_99465951	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:98832504 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6012	CpG island 6012	613 bp distal
Rr281821	regulatory region 281821	103 bp distal
Tmem171	transmembrane protein 171	1162 bp upstream
Tssr123639	transcription start site region 123639	1200 bp upstream
Tssr123640	transcription start site region 123640	1177 bp upstream
Tssr123641	transcription start site region 123641	1149 bp upstream
Tssr123642	transcription start site region 123642	1091 bp upstream
Tssr123643	transcription start site region 123643	958 bp upstream
Tssr123644	transcription start site region 123644	418 bp upstream
Tssr123645	transcription start site region 123645	304 bp upstream