rs239353701 SNP Detail

Summary

• ID
  rs239353701
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:37135456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGTGCTAG AATTTCAGGC
  ATGAGCCAAC ATGCTGGACC CAGCAAAACT TCCTGTTGCA GAGATGAGAG ACACACGCAT
  GCGCCAGCAG AATAGCTGGT GCGCATGGAA CATTGCCTGG CTCTACGTAG CACCTTACTA
  CTGTCTGCTT TCTTCTCAGC TCTCACTACT TCCAAAATAT GAAATACAGT GCAGGTTATC
  T
  TGAGAGTCAC CCTCTCCACC CCTCAGAAAT ATTTCCACAG TAACCTAGTC ATTAGCACAG
  CTCGTTCATT AACGCATCTT ACCACCCACC ACACTAAGAC AGACATAGAC ATCCCCAAAG
  TGCTTTCATT CAAATCTGTC CCGCTTCTCA ATAACGATTG CTGCTTGAGC AGCGAGCCCT
  GCTTGGAAGA TGACGGAGAT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324925275	CHEV_15_37064967	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239353701					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:37135456 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7042	CpG island 7042	148 bp proximal
Gm34820	predicted gene, 34820	434 bp upstream
Gm41301	predicted gene, 41301	within coordinates
Gm41302	predicted gene, 41302	within coordinates
Gm63629	predicted gene, 63629	within coordinates
Rr714	regulatory region 714	within coordinates
Rr501169	regulatory region 501169	502 bp distal
Rr501170	regulatory region 501170	within coordinates
Rr501171	regulatory region 501171	537 bp proximal
Rr501172	regulatory region 501172	664 bp proximal
Tssr131093	transcription start site region 131093	689 bp upstream
Tssr134082	transcription start site region 134082	539 bp downstream