rs239354427 SNP Detail

Summary

• ID
  rs239354427
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:63217572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CGCACCCTT AACACCGTTT CGTTCCGTAC
  TCCGTACCTA ACCGTGGCAT CAGCTGCTTT CACCGTCGCC CTGGTTATAA GTTGCTACTG
  TGGCAGCCCC Cggagatgga gttgtcgctt ggttggtagg atatgcgtag cgctggaatg
  Y
  ctgggttccg cccctagcat aaatccctaa aggtggcaca gacttgtaat cccagtattg
  aggatcatcc tgtgctacac agtgagctct aggccagcgt aggctatgcg agaccagtct
  ccaaaacaaC CAAACCACAC AGAGAAATGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323333508	CHEV_10_62844541	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239354427					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:63217572 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1649	CpG island 1649	within coordinates
Cpgi1650	CpG island 1650	539 bp proximal
Dnajc12	DnaJ heat shock protein family (Hsp40) member C12	650 bp upstream
Gm66647	predicted gene, 66647	64 bp downstream
Rr215754	regulatory region 215754	1029 bp proximal
Rr224928	regulatory region 224928	within coordinates
Rr369009	regulatory region 369009	276 bp upstream
Tssr97916	transcription start site region 97916	951 bp downstream