rs239360777 SNP Detail

Summary

• ID
  rs239360777
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90917406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCT ACACAGAGAA ACCCTGTCTC
  S
  AAAAAAAAAA AAAAAAACAA AAACA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	ZALENDE/EiJ
ss920534026	MGP_WTSI_10_91081544	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	G	G	C	G	G	G	G	C	C	C	C	C	C	C	G	G	G	C	C	G	G	G	G	C	G	G	G	G	G	G	G	G	C	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	ZALENDE/EiJ
rs239360777					SNP	C	C	G	G	C	G	G	G	G	C	C	C	C	C	C	C	G	G	G	C	C	G	G	G	G	C	G	G	G	G	G	G	G	G	C	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920534026	MGP_WTSI_10_91081544	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90917406 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	within coordinates
Cpgi2099	CpG island 2099	639 bp proximal
Ikbip	IKBKB interacting protein	1396 bp upstream
Rr402144	regulatory region 402144	1310 bp upstream
Rr436975	regulatory region 436975	1759 bp distal
Rr436976	regulatory region 436976	191 bp proximal
Rr436977	regulatory region 436977	875 bp proximal
Tssr95222	transcription start site region 95222	547 bp upstream
Tssr95223	transcription start site region 95223	1480 bp upstream
Tssr95224	transcription start site region 95224	1492 bp upstream
Tssr95225	transcription start site region 95225	1537 bp upstream
Tssr98900	transcription start site region 98900	1012 bp downstream
Tssr98901	transcription start site region 98901	1109 bp downstream
Tssr98902	transcription start site region 98902	1139 bp downstream
Tssr98903	transcription start site region 98903	1160 bp downstream
Tssr98904	transcription start site region 98904	1239 bp downstream