rs239370821 SNP Detail

Summary

• ID
  rs239370821
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:48664038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGA ATTTGTGACT GTGCTGTCCC
  Y
  GTGTCCTCTC CCATCAATCT CCTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325174217	CHEV_16_48843788	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239370821					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48664038 () rs orientation: forward

Symbol	Name	Function Class
Retnla	resistin like alpha	Intron
Tssr138680	transcription start site region 138680	1188 bp downstream
Tssr138681	transcription start site region 138681	1095 bp downstream
Tssr138682	transcription start site region 138682	1044 bp downstream
Tssr138683	transcription start site region 138683	1014 bp downstream
Tssr138684	transcription start site region 138684	980 bp downstream
Tssr138685	transcription start site region 138685	939 bp downstream
Tssr138686	transcription start site region 138686	820 bp downstream
Tssr138687	transcription start site region 138687	778 bp downstream
Tssr138688	transcription start site region 138688	80 bp downstream
Tssr138689	transcription start site region 138689	496 bp upstream
Tssr138690	transcription start site region 138690	554 bp upstream
Tssr138691	transcription start site region 138691	591 bp upstream