rs239371700 SNP Detail

Summary

• ID
  rs239371700
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48045871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTCTAGA AACTCGCTCT
  AAAGACGGAA CCGCCACAGC ACCCAAGTAC GTACGATATG CCCAGTTAAT GTGGGGACTT
  GCTTAAAAGT TGGCGCGCTG GGAAGTGTCG CTCCTGAAAT TGACAACTTT TAATATGGGG
  TGGCCCCCTC CCGCCGCCTC CCCTTTCAGG TTTTCTCGCC CAGCTACCGG TGGGTTCCAA
  K
  CTGAAACTTT TCCCTTGTAG CTGGCCCTCA GGGACTCTGA AGCTTGTGAG ATTCCTCTCC
  CCACCCAAAG AGGCTAAAAG CCTCTAACAA AGAGGAGGAC CTGGATTTGT GCTGTAGCTG
  CTCCAGCGTC GTAATTCAGG GTATTTCGGC TCTAGTTGTC ATGGTAATGA TGCTCTCGGC
  GGCGGCGGCG GCGGCGGCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361430080	MGP_WTSI_4_48058743	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239371700					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361430080	MGP_WTSI_4_48058743	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48045871 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14278	CpG island 14278	within coordinates
Cpgi14279	CpG island 14279	1416 bp proximal
Gm68858	predicted gene, 68858	1061 bp downstream
Gm69235	predicted gene, 69235	1643 bp downstream
Nr4a3	nuclear receptor subfamily 4, group A, member 3	within coordinates
Rr376438	regulatory region 376438	654 bp downstream
Rr591927	regulatory region 591927	708 bp distal
Rr591928	regulatory region 591928	within coordinates
Rr591929	regulatory region 591929	325 bp distal
Rr591930	regulatory region 591930	1317 bp proximal
Tssr37187	transcription start site region 37187	747 bp downstream
Tssr37188	transcription start site region 37188	711 bp downstream
Tssr37189	transcription start site region 37189	681 bp downstream
Tssr37190	transcription start site region 37190	633 bp downstream
Tssr37191	transcription start site region 37191	564 bp downstream
Tssr37192	transcription start site region 37192	538 bp downstream
Tssr37193	transcription start site region 37193	482 bp downstream
Tssr37194	transcription start site region 37194	99 bp upstream
Tssr37195	transcription start site region 37195	1369 bp upstream
Tssr37196	transcription start site region 37196	1395 bp upstream
Tssr37197	transcription start site region 37197	1431 bp upstream
Tssr37198	transcription start site region 37198	1453 bp upstream
Tssr37199	transcription start site region 37199	1468 bp upstream
Tssr37200	transcription start site region 37200	1513 bp upstream
Tssr37201	transcription start site region 37201	1867 bp upstream
Tssr37202	transcription start site region 37202	1993 bp upstream
Tssr41631	transcription start site region 41631	967 bp upstream
Tssr41632	transcription start site region 41632	890 bp upstream
Tssr41633	transcription start site region 41633	1064 bp downstream
Tssr41634	transcription start site region 41634	1264 bp downstream