rs239374533 SNP Detail

Summary

• ID
  rs239374533
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134129064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTGGGCG GACGATGGAA
  CTGCACATTC TGGAACACCG GCTGCAAGTT GCCAGCGTCG CCAAGGAGAG TATCCCGCTC
  TTCACCTACG GCCTCATCAA ACTTGCCTTC CTGTCTTCCA AGACCAGGTG AGAGAAAGAG
  AGTAAGGGGC GAGGGGATGG CTGACGGGGG GGGGGGGTGT CGGGGGGGGC TCATGGTACC
  R
  GCCCCGGGAC AGACAAAGAG GCGCACCCCG GGGGGACGCA GTGCAAAACA ACTTCATCCC
  CCCCTAATCT CTGCCATTCT CCTGCATCGG ACAAAGCCAC CCCTGTGCTC TCTAGTGGGG
  GTCCCCTCCA CCCAGAAGCC CCCACCCCAC TGCGCCTCCA ACTGCTGCCA CCAACACCCA
  ACACCCCCCC CTCCCGTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366802136	MGP_WTSI_5_134576095	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239374533					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366802136	MGP_WTSI_5_134576095	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134129064 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Castor2	cytosolic arginine sensor for mTORC1 subunit 2			Intron
				Noncoding-Transcript-Variant
Cpgi16713	CpG island 16713			89 bp distal
Gm15627	predicted gene 15627			584 bp upstream
Rr621932	regulatory region 621932			1039 bp distal
Rr621933	regulatory region 621933			504 bp distal
Rr621934	regulatory region 621934			972 bp proximal
Tssr49079	transcription start site region 49079			530 bp downstream
Tssr49080	transcription start site region 49080			465 bp downstream
Tssr49081	transcription start site region 49081			428 bp downstream