rs239375281 SNP Detail

Summary

• ID
  rs239375281
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30731497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGAAACT TCTGTTCGTA
  CTGGGAAGGC ATGCGGTTCA GTTGCACACC CCACCCAAGA GCTTCTCTTC TTTCTTGTGA
  CGTATTTTCC CCTTATTTCC ACGTGCTTTG TGGCTTGATG AAATGATTTT GTAATCCCCA
  GTTCACTCTG ACCTGAAGTT CTTGCAACTG CATTATGCAA CCCCCTCCCC CCCGCCCCGC
  Y
  GCCTGGGACC TGGTCTCTTG TCTGTGCTGT GACCCTGCCC ATAATCTTGG AGAAGACACT
  TATCCTTCCC CACAGCACCC TGAGCCTGAA AAGGCCTGCA TAGCTGCACT AGGTTGCTCC
  CTCCCAATAA GGAGGAGTCC AAGGAACTCC AGGAATTGCC TGCTAGAGCC CATCCCTCCT
  CCCAGGCCCT CTCTGCTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322138560	CHEV_7_31817091	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239375281					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30731497 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	656 bp downstream
Rr644976	regulatory region 644976	1134 bp distal
Rr644977	regulatory region 644977	within coordinates
Rr644978	regulatory region 644978	1421 bp proximal
Tssr65829	transcription start site region 65829	781 bp upstream