rs239375926 SNP Detail

Summary

• ID
  rs239375926
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:45008845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTTTGGT ATCTCTGATC
  TGAACACATA TTTGCATATC TAATGCTTGA TTTTTAAAAA TGTGTCTTTT AAAGATTCAT
  TCTTTCAGGA CAAAGAAATA AAGTGATATT TTAAAATGTA AAATTTTCTG CACTTGTAAA
  AGTTTGTTAT GCTATTATAT TCTTTCTAGA GATCCATAAA ACTTTTTAAC AATTTGTAAA
  M
  CATTTATGTA GCAAGCACAT TGAAACACAT GGCAGCTGTA CAATTAGGAA AACGATCTCT
  ATGTGAAATC AAGTAACCGT TCTTCCTAAA TTCACATACG TGCACTAATT ATGCACCATA
  TATCCTTACT GAAATGTGGT CATTGAACTT CTTGGTTGAT TTACTATAGC ATAAGCAGGC
  ATATGAGGCA TTTGACAAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353808108	MGP_WTSI_2_44974353	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C	A	A	A	A	C	A	A	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239375926					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C	A	A	A	A	C	A	A	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353808108	MGP_WTSI_2_44974353	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:45008845 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11634	CpG island 11634	1276 bp distal
Gm28643	predicted gene 28643	within coordinates
Rr373117	regulatory region 373117	1183 bp downstream
Rr556444	regulatory region 556444	1449 bp distal
Rr556445	regulatory region 556445	972 bp distal
Tssr17636	transcription start site region 17636	1549 bp downstream
Tssr23988	transcription start site region 23988	1835 bp upstream
Tssr23989	transcription start site region 23989	1488 bp upstream
Tssr23990	transcription start site region 23990	1458 bp upstream
Tssr23991	transcription start site region 23991	1422 bp upstream
Tssr23992	transcription start site region 23992	1317 bp upstream
Tssr23993	transcription start site region 23993	1294 bp upstream
Zeb2	zinc finger E-box binding homeobox 2	1438 bp upstream