rs239376631 SNP Detail

Summary

• ID
  rs239376631
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32449838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTCTGAT GCATTTTGGT
  TTGCTTGCTT CACAGTCTAA TAATATAATA ATAAGTAACT TTTCTTTTCC TCTAAAGCAT
  TTTTCTTTCA GTATTTTAAT GATTCTATCC CACAGATGTG TAACATACTT TAAACATTTA
  GCAATACTGC AGAAAGAATT CAAGGCTGTA ATTCTGTAGT AGGGGACTTG CTAGCATACA
  M
  AAAGTCCCCA GTTTGGCCCC TAGCTTAAAA AACAAACAAA CAAACAAACA AACCCAAAAA
  ACCCAGCTGG GCGTGGTTTT AACCCCAGCA CTCGGGAGGC AGAGGCAGAC GGATTTCTGA
  GTTCGAGGCC AGCCTGGTCT ACAAAGTGAG TTCCAGGACA GCCAGGGCTA CACAGAGAAA
  CCCTGTCTCG AAAAACCAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357464064	MGP_WTSI_3_32294611	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239376631					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357464064	MGP_WTSI_3_32294611	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32449838 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13056	CpG island 13056	998 bp proximal
Gm56797	predicted gene, 56797	1376 bp upstream
Gm65709	predicted gene, 65709	within coordinates
Pik3ca	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	1365 bp upstream
Rr397633	regulatory region 397633	1163 bp upstream
Rr574951	regulatory region 574951	1299 bp distal
Rr574952	regulatory region 574952	319 bp proximal
Rr574953	regulatory region 574953	975 bp proximal
Rr574954	regulatory region 574954	1492 bp proximal
Rr574955	regulatory region 574955	1702 bp proximal
Rr574956	regulatory region 574956	1993 bp proximal
Tssr28746	transcription start site region 28746	1337 bp upstream
Tssr28747	transcription start site region 28747	1418 bp upstream
Tssr28748	transcription start site region 28748	1461 bp upstream
Tssr28749	transcription start site region 28749	1549 bp upstream
Tssr28750	transcription start site region 28750	1579 bp upstream