rs239380262 SNP Detail

Summary

• ID
  rs239380262
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136487368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAAGGAG ATGAGCCTCA
  CTTGCATAGC ATGAGTTTCC CTGAAGATCT TCCCAAGAAG GGTACAAACC CACACGACAA
  CTCTGCAAGT TTACTAAGAA GGCTGGGCAA AAACACAGAG AGAAGTTTCC TTCTGGTATT
  TTCCTGCAAG AAGTGTCTGA TTGTGAAAAC CAGCCCTGTA CTTGAAGGTT CCCCACTGCA
  S
  CAAGTGTGAT GTCAGCTGCC TTTATTTATT ACCTATTTGA AGGGAAGGGG GGTGGGGGAG
  AAGAAAATTT CCTGTTCCTT CCCTAACAAG ATGAGTCACA ATTTCCAAAC ATCAATCAAT
  CCTTGAGTCA GAGTGGAGTA AGGAGAGGAA ACGGCTGCAA GGCCTCCCAC CACGAGCACT
  TCTGAGAACC ATGGAAAATC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321699563	CHEV_5_136934384	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239380262					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136487368 () rs orientation: forward

Symbol	Name	Function Class
Cux1	cut-like homeobox 1	within coordinates
Rr622611	regulatory region 622611	1790 bp distal
Rr622612	regulatory region 622612	within coordinates
Rr622613	regulatory region 622613	1449 bp proximal
Tssr1673	transcription start site region 1673	1805 bp upstream
Tssr53839	transcription start site region 53839	34 bp upstream
Tssr53840	transcription start site region 53840	within coordinates
Tssr53841	transcription start site region 53841	1466 bp downstream