rs239382429 SNP Detail

Summary

• ID
  rs239382429
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17841855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTG TCTGTCCATC TTTCTTGGGT
  R
  GACGGGGAGT GAAATCCGGG AGCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320673709	CHEV_3_17687691	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239382429					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17841855 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	560 bp distal
Gm10742	predicted gene 10742	793 bp upstream
Gm56811	predicted gene, 56811	553 bp upstream
Gm65999	predicted gene, 65999	1975 bp downstream
Gm66000	predicted gene, 66000	within coordinates
Rr573839	regulatory region 573839	1762 bp distal
Rr573840	regulatory region 573840	1643 bp distal
Rr573841	regulatory region 573841	1345 bp distal
Rr573842	regulatory region 573842	564 bp distal
Rr573843	regulatory region 573843	63 bp distal
Rr573844	regulatory region 573844	1141 bp proximal
Rr573845	regulatory region 573845	1642 bp proximal
Rr573846	regulatory region 573846	1766 bp proximal
Tssr32676	transcription start site region 32676	1373 bp upstream
Tssr32677	transcription start site region 32677	846 bp upstream
Tssr32678	transcription start site region 32678	1916 bp downstream