rs239386391 SNP Detail

Summary

• ID
  rs239386391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:47886929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCCGCGA CGCCCGGACG
  TGCGGAGCCG CCCCGCCCCG AAGCCGCCCG TTTCCTGCGG GGCGGCGCGA CGGCACCTGA
  GCTACTGCGG CGGGGCCTGG GAGCGCGCTG ACCAGGAGGT AGAGCTCGCG CCGCTGCATC
  GTCCCGGCCT GGTACCCGGC TGCGCAGGGT GAGGAGCAGG GCCGGGGACT CCAGGGCGCG
  Y
  GGGCGCGGGG CGCAGGGCGG GGGGCTGCGC TCGCGGGGTA GGCCTCGCAC GGAGGTCGCA
  GTGTGCAGCG TCCGCCCAGG CCGCGCCGCC GCCGGCCCGC TCCGAGGATC CGCCTGCGGG
  TTCGGGCTCC AGGGTTCTGG CTCGGCGATC TCCCCGTGGC TGCAAGGTCC GATCCCAGGT
  CCGCGAGTGG CCGGAGCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391014727	MGP_WTSI_14_48269147	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	C	T	T	T	T	T	C	C	C	C	C	C	T	T	C	T	T	T	T	C	C	T	C	T	C	T	C	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239386391					SNP	T	T	T	T	C	T	T	T	T	T	C	C	C	C	C	C	T	T	C	T	T	T	T	C	C	T	C	T	C	T	C	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391014727	MGP_WTSI_14_48269147	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47886929 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6388	CpG island 6388	within coordinates
Ktn1	kinectin 1	within coordinates
Rr297095	regulatory region 297095	within coordinates
Tssr125321	transcription start site region 125321	1045 bp downstream
Tssr125322	transcription start site region 125322	1002 bp downstream
Tssr125323	transcription start site region 125323	352 bp downstream
Tssr125324	transcription start site region 125324	83 bp downstream
Tssr125325	transcription start site region 125325	914 bp upstream
Tssr128337	transcription start site region 128337	208 bp upstream