rs239388072 SNP Detail

Summary

• ID
  rs239388072
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97148518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGTTTC CAATTTCTCA
  GGTTGTATTT TAAAATCTTG AAGAGTTAGA GATCAAGGGC AAGGCATGAT TATAGCAGTG
  GTGTATTCGA TTGCTCTAGG GGAGCAGAAC TCATACAGTG AATCTGTATA TAAAGAGGGG
  ACTTACCAGC TAGGGTTGGA CTACTGTCTT AGTAGTCCCT CATTGGCCAG TCCCACACTG
  K
  GCATGCTGAA GACCTAGTAG CTATGCTGTC TGTGAGGTTG GATGCCTCAG CAGACCCAGC
  CTGCCTCTGA AGGCTTAGAG CTGGATTCTG CTATTAACAG AGGAATACAG CAGCGATGGC
  AGCAGTGGGG TAGATGACCT TGCCAGTGAG AGCAAGGGCC AGCAGGCAAA AAGCAAAGTT
  TTCATCAGTG CTGCCATAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325076424	CHEV_15_97081068	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239388072					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97148518 () rs orientation: forward

Symbol	Name	Function Class
Gm57814	predicted gene, 57814	1475 bp upstream
Pced1b	PC-esterase domain containing 1B	within coordinates
Rr305670	regulatory region 305670	1118 bp distal
Rr308785	regulatory region 308785	718 bp distal
Rr308786	regulatory region 308786	883 bp proximal
Rr312356	regulatory region 312356	1717 bp distal