rs239393566 SNP Detail

Summary

• ID
  rs239393566
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:24244749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCAGGAG TTACTTTTGT
  GTCAGCTCCT GGATCTACCC AAATTAGCAC TCTGATGATG CCCTTCAGTG TGGCAAGCCT
  GGTGGAAAGT TTCATTTACC CACTGTGAGA AGCCATGAAT ATCTGGTACA CAAGAAATAT
  TTCAAGGATA AAGAAATGGG TCTAGCCTTT ACTTTGGAAC CAGAGTTTCT GACAATTCAT
  M
  ACTATGTAAG ACTTGACCAG CAAACAGTAC TTCTGCCTCT TTACCTGTTT CATTGTTTAT
  TCTAAAACAA GGACTTATGT AGCCCAGGGT AGCCTAGAAT CACCAAACCT ACCTTTCACC
  TTCTAAATGT TGGGATTACA GGCATGTGCT ACTATATTGC AATCCTGGGT TTACTGAGGG
  CCAGCAGCCA TCTCTCCAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324294213	CHEV_13_24152635	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239393566					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24244749 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4933427I18Rik	RIKEN cDNA 4933427I18 gene			within coordinates
Carmil1	capping protein regulator and myosin 1 linker 1			Intron
				Noncoding-Transcript-Variant
Tssr121764	transcription start site region 121764			1453 bp upstream
Tssr121765	transcription start site region 121765			1442 bp upstream