rs239399105 SNP Detail

Summary

• ID
  rs239399105
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172187460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTC CGCTCCGGGG GCGGGCCCTA
  G
  AGGTGTTGGG GCGGGGCCTG TCGGG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320618206	CHEV_2_172171040	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239399105					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172187460 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12819	CpG island 12819	within coordinates
Fam210b	family with sequence similarity 210, member B	25 bp upstream
Rr56171	regulatory region 56171	within coordinates
Tssr21944	transcription start site region 21944	39 bp upstream
Tssr21945	transcription start site region 21945	55 bp upstream
Tssr21946	transcription start site region 21946	88 bp upstream
Tssr27939	transcription start site region 27939	130 bp downstream