rs239401442 SNP Detail

Summary

• ID
  rs239401442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7662400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aCAAATCAA AGAACAGAGG CAAATATTTA
  AAAAGAAGCT CAAAACAAAA TACAACAGAA AACAATCTTT AAGCATTTAC AATGCCAGGA
  GAGACCATTT AATGGTCagt aattctaagc agggactctg gagccagaag gcccagatga
  R
  gatcttggct gtagagttta ccaactcaaa ctttaaacgt gtcactgagc ctcctctttc
  ttgattctca aatgtctaaa atggaaatgg taatgctaga agcacctgcc ttcccgggct
  tttgtgagga ttcaaacata tgtaagtcac                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325888278	CHEV_X_7373287	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239401442					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7662400 () rs orientation: forward

Symbol	Name	Function Class
Gripap1	GRIP1 associated protein 1	within coordinates
Rr4742	regulatory region 4742	1201 bp proximal
Rr7807	regulatory region 7807	773 bp distal
Rr10055	regulatory region 10055	1001 bp proximal
Tssr160440	transcription start site region 160440	1848 bp downstream
Tssr160441	transcription start site region 160441	1817 bp downstream
Tssr160442	transcription start site region 160442	1747 bp downstream