rs239405910 SNP Detail

Summary

• ID
  rs239405910
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110484728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCCACCT GCCTCTGCCT
  CTCAAGTGCC GGGATTAAAG TCGTGCGCCA CCACGCCCGG CTCCGTCAAC CTCTTTTTAT
  ACTGGGAGGA GAGAGTAATT CAGTGGCACT TATTCGGCCC TGGTTGCTGT TTGCTCTTTT
  TTTTGTTGTT GTTTGTTTGT TTTTCGAGAC AGGGTTTCCC TGTATAGCCC TGGCTATCCT
  R
  GAACTCACTT TGTAGACCAG GCTGGCCTCG AACTCAGAAA TCTGCCTGCC TCTGCCTCCC
  AAGTGCCAGG ATTAAAGGCG TGCGCCACCA CGCCCGGCTG CTATTTGCTT TTAAGCAGGT
  AAGGTAGCCT GACTCTGATT ATGCTGCAGC TCCCGAAAGA GATGCGAGAT CATTCTTGAG
  TTCAAAGGAA AAGGCCATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378907292	MGP_WTSI_9_110558164	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239405910					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378907292	MGP_WTSI_9_110558164	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110484728 () rs orientation: forward

Symbol	Name	Function Class
Ccdc12	coiled-coil domain containing 12	843 bp upstream
Cpgi22385	CpG island 22385	1220 bp distal
Cpgi22386	CpG island 22386	667 bp proximal
Gm42470	predicted gene 42470	19 bp upstream
Gm69744	predicted gene, 69744	within coordinates
Nbeal2	neurobeachin-like 2	1499 bp upstream
Rr401701	regulatory region 401701	1281 bp downstream
Rr401702	regulatory region 401702	666 bp upstream
Tssr87398	transcription start site region 87398	806 bp upstream
Tssr87399	transcription start site region 87399	834 bp upstream
Tssr91642	transcription start site region 91642	1655 bp upstream
Tssr91643	transcription start site region 91643	1579 bp upstream
Tssr91644	transcription start site region 91644	1448 bp upstream
Tssr91645	transcription start site region 91645	1406 bp upstream
Tssr91646	transcription start site region 91646	722 bp downstream