rs239406507 SNP Detail

Summary

• ID
  rs239406507
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42151833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGGGGAC GTGCGTCCCG
  CGAACCTGGC GCAGCAGACG CCGCCCCCTG GCCTGGCCGC CCGGGAGACG CGAGCGAATC
  GACGGCCCCG CGCGGGGCAG CCCCCTCCCC CGCTGCCGTC GCCAGAACCG CAGGTCTCTC
  CCGGACTAGA TGGCGGGGCG GAGGGGGGAG GGGCGTCCCG GGGGAGGGGT GGCCGCGCCA
  K
  TAAGTGTGGG CGGCCTCCGG ACCCCAACAG CTCCGCAGTG GTCGGAGGGC GAGCGTGCGT
  GCGTGCGTTT GTTTATGTTT GGCTCTGGCT CGCTCAAGTG CCTCCCGCGG AGGCGCAGGG
  CAAGTCAGCA GAGTCCTGGG CTCTTCTCCC GCTCCCCAGC CCTGCGATCC CCCCCACCCC
  TCCCAGGCGA GAGGCCCCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380164378	MGP_WTSI_10_41995643	EVA_MGPV3	EVA_MGPV3	f	SNP	G	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	G	T	G	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239406507					SNP	G	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	G	T	G	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380164378	MGP_WTSI_10_41995643	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42151833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1479	CpG island 1479	within coordinates
Foxo3	forkhead box O3	within coordinates
Gm38485	predicted gene, 38485	1635 bp upstream
Gm56983	predicted gene, 56983	1048 bp downstream
Gm66047	predicted gene, 66047	1031 bp upstream
Rr401852	regulatory region 401852	1723 bp upstream
Rr430523	regulatory region 430523	1686 bp distal
Rr430524	regulatory region 430524	849 bp proximal
Rr430525	regulatory region 430525	1042 bp proximal
Rr430526	regulatory region 430526	1876 bp proximal
Tssr93078	transcription start site region 93078	1739 bp downstream
Tssr93079	transcription start site region 93079	1055 bp upstream
Tssr97432	transcription start site region 97432	1894 bp upstream
Tssr97433	transcription start site region 97433	185 bp upstream
Tssr97434	transcription start site region 97434	808 bp downstream
Tssr97435	transcription start site region 97435	828 bp downstream
Tssr97436	transcription start site region 97436	851 bp downstream
Tssr97437	transcription start site region 97437	907 bp downstream
Tssr97438	transcription start site region 97438	1763 bp downstream
Tssr97439	transcription start site region 97439	1798 bp downstream