rs239407222 SNP Detail

Summary

• ID
  rs239407222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90629340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTTTTTA GAATCCATGC
  TCAAAGTGAC AAATGTCTTT ACCACTGCAA CCGCCCCGGA TCTCCATGTG CTCGGCATCT
  TTCTCCATCA ACCCCAAGAA GCATCTATCT CTACCTACAT CCTTTCTCTT GGGACCTTCT
  GCCTAGCTCA GGCTGGGCAC AGACTCTAGC AACCCCCTTG CTACCGTTTT TTTTTTTTTT
  Y
  TTTTCTTTTT CAGCATAATT GTGGTAAAGT CACCTGTCTG CTCCGCTCTG TTCTGCTCGT
  GTGACAGACT ACTAGGCAAA GAAACTGGAA GTGCAGACTT GAGCTGGGTT TCTGGTTTGC
  TTACAGAGAA TGTCATTCAT TGTTAGCTGA GGTCAGAGGT TCTTTGCTTA GAATATTTAA
  TATCAAGGCA GTGTTCTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss397306251	MGP_WTSI_16_90832697	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs239407222					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397306251	MGP_WTSI_16_90832697	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90629340 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8431	CpG island 8431	565 bp distal
Eva1c	eva-1 homolog C	within coordinates
Rr519213	regulatory region 519213	1329 bp distal
Rr519214	regulatory region 519214	796 bp proximal
Tssr139315	transcription start site region 139315	1574 bp downstream
Tssr139316	transcription start site region 139316	1302 bp downstream
Tssr139317	transcription start site region 139317	1228 bp downstream
Tssr139318	transcription start site region 139318	319 bp upstream