rs239413302 SNP Detail

Summary

• ID
  rs239413302
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70685843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGTGCTG GGAAAAAAGT
  GTTCAGTCAG CAGGTGAAGG TGTGCCGCTC CATCATCACA ACTTGAGTTC AGTTTCAGCA
  CTCACATCTG GTAGTTCACA ACTTGTGCAT ACATGTAAAC ACACAATAGT CATGATGATG
  TTAAATAATA TTGATAACAA ATAATTTATT AATAATAATA GTTATTAAAG CACAAATGAA
  R
  CAGAGGCAGG CTAACCTCTG AACTGGAGGC CAGCACAGTC TACAGTGCAA GTTCCTGGAC
  AGCCAGGACG ACACGGAGAA ATCCTGGCTT GAAAAACAAC AACAAAACAA GAAACACTGA
  TACCAGAACA ACGGAGGCAG AAATGGTAGA CCTCTGTGAG TTTCTGGCCA GCCTGATCTA
  CACAGTGAGA CCCTCCTGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	SPRET/EiJ
ss375097591	MGP_WTSI_8_72757092	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	SPRET/EiJ
rs239413302					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375097591	MGP_WTSI_8_72757092	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70685843 () rs orientation: forward

Symbol	Name	Function Class
Armc6	armadillo repeat containing 6	within coordinates
Cpgi20446	CpG island 20446	656 bp proximal
Rr400897	regulatory region 400897	1161 bp upstream
Sugp2	SURP and G patch domain containing 2	995 bp upstream
Tssr77717	transcription start site region 77717	994 bp upstream
Tssr77718	transcription start site region 77718	1339 bp upstream
Tssr77719	transcription start site region 77719	1420 bp upstream
Tssr77720	transcription start site region 77720	1448 bp upstream
Tssr81601	transcription start site region 81601	904 bp downstream
Tssr81602	transcription start site region 81602	1208 bp downstream