rs239420566 SNP Detail

Summary

• ID
  rs239420566
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10786450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTGAATA TTTAGCACAA
  GAAAAAAAAA ATAATTTGGG AGTGGCCTAT AGTCACTAAG ACATTTTGAA GGTTAATTCA
  AAAGGAGACA TTGAGAAGCT TTGAGATTTG GTAAAGAATA GAAAAGGGGG TGCTGGGAGG
  GAAGTGGGGG AATAGGATTT CTGCAGTCCA TGAAGAAAGC TAGTAAGCTG CCAACGCGGG
  M
  CTCAGTCAGC AGTGCCGCTG AGACCTGCAC CGTGCAGCAG CATGCGGATG TCTGTGGCCT
  GAGTAGTAAG CAAGGGGAGA CATTTCATAA CCCAAATCTT GAAGTAGCCT TTAGAAGCTA
  TTGTGCTCTG GAGGCAGGGA TGCAGGTTTA CTAGAGGAGC GAGACACAAT TGAAACAACT
  GTTTAATTGA AAACAATAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399687777	MGP_WTSI_18_10786448	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239420566					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399687777	MGP_WTSI_18_10786448	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10786450 () rs orientation: forward

Symbol	Name	Function Class
Gm58661	predicted gene, 58661	962 bp upstream
Mib1	MIB E3 ubiquitin protein ligase 1	within coordinates
Mir1a-2	microRNA 1a-2	898 bp upstream
Mir1b	microRNA 1b	883 bp downstream
Mir133a-1hg	Mir133a-1, Mir1b and Mir1a-2 host gene	within coordinates
Mirc18	microRNA cluster 18, including Mir1b through Mir1a-2	883 bp distal
Rr533800	regulatory region 533800	1641 bp distal
Rr533801	regulatory region 533801	973 bp distal
Rr533802	regulatory region 533802	608 bp distal
Rr533803	regulatory region 533803	within coordinates
Rr533804	regulatory region 533804	973 bp proximal
Rr533805	regulatory region 533805	1233 bp proximal
Tssr152437	transcription start site region 152437	968 bp upstream
Tssr152438	transcription start site region 152438	1234 bp downstream