rs239425018 SNP Detail

Summary

• ID
  rs239425018
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110244242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGGGCGA TGCATGGGAC
  GCAAGCAGCT GGAGCTGTAG TATCCGGCTG GGGTCCCGTT ACCCCAGAGA AGGCCCCTGT
  GAGTGCTGGA GCATTCTAGG GAGTGCGATT CTTAGGCGCT GCCTTCGGGT TGAGGCCTTG
  ACCTGAGGGG TCATTGTGAG GTGTATCTAA AGTGGAACTT GCTTAGGGTC TCGAGGACCC
  S
  AGGTCAAGCA GCCCCGCCGC CCCTGAACCC AAGTCTCCAG CAGTGCGCCA CGCGCAGAGA
  CAGATTAGGA GGTCTGCGCC GCTGTGGCAG AGCCGACCAG AGCCCCACGC TGTTGGGGAG
  TTGCCCCGCA CCCCTAAAAA GCCTCAGCAC ACGTTCCCTG TTGAAAGTAC GCACTTTACG
  CGTCCGGGCG CCTCCGCGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387330510	MGP_WTSI_12_111516018	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239425018					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387330510	MGP_WTSI_12_111516018	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110244242 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5110	CpG island 5110	within coordinates
Dio3	deiodinase, iodothyronine type III	1422 bp upstream
Dio3os	deiodinase, iodothyronine type III, opposite strand	within coordinates
Mir1247	microRNA 1247	240 bp downstream
Rr472865	regulatory region 472865	1569 bp distal
Rr472866	regulatory region 472866	within coordinates
Rr472867	regulatory region 472867	271 bp proximal
Rr472868	regulatory region 472868	376 bp proximal
Tssr115195	transcription start site region 115195	1420 bp upstream
Tssr117772	transcription start site region 117772	1124 bp downstream
Tssr117773	transcription start site region 117773	1150 bp downstream