rs239429396 SNP Detail

Summary

• ID
  rs239429396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:117161636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTGTTCC CTGAGCGCTA
  GCATTTTGTA TGAACTTTTG AAGATGCGAC AAGCAAGCAC TCTATCACTC TATAAGGAGG
  ATGACGGGCT AAAGAGGAGT TCTTGGAAAA GAAGATGTGC TGAACAATTC CGACAGTAAC
  GAAGGTGCCT AGGATAGAGG CAAATGCAAG GATTTAGGCT CCAGGAGTCG CTCTGGTCAC
  Y
  AGTCATCAGG AAACCAGCAT CCTGCAGATT TATACTTCAG TACTACAGAA CTAGGCCTGA
  CCCTGTACTG ACTTCTCAGG AACTGGGAGA CCAGTGTCCA CAAGGCCTCA CTACTGGATA
  GCATTTCTTT TCTTCTTTTT CTGATTGGTT AGTTTCAGGA GCTGTGGGTT TCAGGGCAGA
  CTTAAGTATA TTTGATCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392671414	MGP_WTSI_14_117323446	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239429396					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392671414	MGP_WTSI_14_117323446	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:117161636 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6842	CpG island 6842	945 bp proximal
Gpc6	glypican 6	1091 bp upstream
Rr497535	regulatory region 497535	716 bp proximal
Rr497536	regulatory region 497536	1723 bp proximal
Rr497537	regulatory region 497537	1914 bp proximal
Tssr127141	transcription start site region 127141	981 bp upstream
Tssr127142	transcription start site region 127142	1035 bp upstream
Tssr127143	transcription start site region 127143	1067 bp upstream
Tssr127144	transcription start site region 127144	1155 bp upstream
Tssr127145	transcription start site region 127145	1281 bp upstream
Tssr127146	transcription start site region 127146	1292 bp upstream
Tssr127147	transcription start site region 127147	1321 bp upstream
Tssr127148	transcription start site region 127148	1334 bp upstream
Tssr127149	transcription start site region 127149	1548 bp upstream
Tssr127150	transcription start site region 127150	1579 bp upstream