rs239430716 SNP Detail

Summary

• ID
  rs239430716
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85414205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTC TGGTTCGCAG CAGGGCGCCC
  S
  GAGGCCTCGC CTCTCGGCCC TCCGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322751348	CHEV_8_87211475	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239430716					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85414205 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20705	CpG island 20705	within coordinates
Cpgi20706	CpG island 20706	1905 bp proximal
Nacc1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	within coordinates
Rr666573	regulatory region 666573	within coordinates
Rr666574	regulatory region 666574	313 bp distal
Rr666575	regulatory region 666575	316 bp proximal
Rr666576	regulatory region 666576	1119 bp proximal
Rr666577	regulatory region 666577	1646 bp proximal
Trmt1	tRNA methyltransferase 1	within coordinates
Tssr78429	transcription start site region 78429	1228 bp downstream
Tssr78430	transcription start site region 78430	1693 bp upstream
Tssr78431	transcription start site region 78431	1732 bp upstream
Tssr82111	transcription start site region 82111	477 bp upstream
Tssr82112	transcription start site region 82112	5 bp upstream
Tssr82113	transcription start site region 82113	28 bp downstream
Tssr82114	transcription start site region 82114	263 bp downstream
Tssr82115	transcription start site region 82115	323 bp downstream