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rs239431871 SNP Detail
Summary
  • ID
    rs239431871
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:141932533 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATCCTAAGCT AAGTTCCCAT
    TCTGCATCTG CTGCCCTGTT GAGGATCCTT GGCCCTATAG ATATAGGCTT CCAGCCCAGT
    CCCACAAAAG CTGCTGGGTA CAGCTGGCCC TTCTCTTCAG GATGTTGGCT GGGGGTGATC
    AGGGCCAGCC ATTGATAGCC AAGCTCAAGG CTGAGAGTCA GGCTGGAGCT GAGGGACAGG
    R
    ATGCTCTCTG CCTGGCAAAA CCCAAGGCAG GCTTCTAAGA GGAAGCCAGG GTCACGGTCC
    TGAGAAGCTG AGCTGGCTTC AGCCATGGAC ATAGCACTTG CTATCACTCT GCTTCTCCTG
    TAAACATTTC TCTCAACTCC CCTACACAAT ACCTTCAAAC AGAACACAGG GAGAGTGGTC
    TGTACCTACA GCAGTAAATG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss373449935 MGP_WTSI_7_149564701 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs239431871 SNP G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss373449935 MGP_WTSI_7_149564701 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:141932533 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Ctsd cathepsin D Intron
Gm49369 predicted gene, 49369 Intron
Rr658150 regulatory region 658150 1908 bp distal
Tssr70133 transcription start site region 70133 1918 bp downstream
Tssr70134 transcription start site region 70134 1720 bp downstream
Tssr70135 transcription start site region 70135 1665 bp downstream
Tssr70136 transcription start site region 70136 1453 bp downstream
Tssr70137 transcription start site region 70137 1987 bp upstream
Tssr75762 transcription start site region 75762 1918 bp upstream
Tssr75763 transcription start site region 75763 1881 bp upstream
Tssr75764 transcription start site region 75764 1856 bp upstream
Tssr75765 transcription start site region 75765 1736 bp upstream
Tssr75766 transcription start site region 75766 1714 bp upstream
Tssr75767 transcription start site region 75767 1704 bp upstream
Tssr75768 transcription start site region 75768 1682 bp upstream
Tssr75769 transcription start site region 75769 1660 bp upstream
Tssr75770 transcription start site region 75770 1628 bp upstream
Tssr75771 transcription start site region 75771 1402 bp upstream
Tssr75772 transcription start site region 75772 1344 bp upstream
Tssr75773 transcription start site region 75773 1144 bp upstream
Tssr75774 transcription start site region 75774 1994 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory