rs239432602 SNP Detail

Summary

• ID
  rs239432602
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:103285096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTTACTG GTTTGGCAGT
  TTAGAGAACA GTGCACAGGG AACTTGCCAG GGCTCCTGAC ACTTATTATA AAACGAATGA
  CTCCATACTC CGCTTTAATC TATACATTAG TCACAGGAGC TTACTAAAAA GATAGACAAG
  TGCCCCTATA AAGTCAAGCA CGCCAGCAAG ACATTTGACT TGTAGATGAA GGATGACTCA
  Y
  AGGAATCTGA GTGGAGCTAT TGTCCCCCTT ATGATCTCTC CCTCCATGGT CAGGGAGGGC
  GGCTTGTTCT TTGGCTCTCA GATCGTGTTC AGCACTATCA GGTCAGGGGA GCCCAGTGGT
  CTGTCGTAAA TCACATAAGC AGTGCCAGCC CGATGCCTTG AGATCTATGC TGCTGTTCCT
  CATCTGCTAT TCATCAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392295900	MGP_WTSI_14_103446877	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239432602					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392295900	MGP_WTSI_14_103446877	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:103285096 () rs orientation: forward

Symbol	Name	Function Class
Acod1	aconitate decarboxylase 1	within coordinates
Gm41235	predicted gene, 41235	within coordinates
Rr496962	regulatory region 496962	1033 bp proximal
Tssr4512	transcription start site region 4512	1419 bp upstream
Tssr126971	transcription start site region 126971	640 bp downstream
Tssr126972	transcription start site region 126972	1220 bp upstream
Tssr126973	transcription start site region 126973	1341 bp upstream
Tssr126974	transcription start site region 126974	1595 bp upstream
Tssr126975	transcription start site region 126975	1605 bp upstream
Tssr126976	transcription start site region 126976	1622 bp upstream
Tssr126977	transcription start site region 126977	1644 bp upstream
Tssr126978	transcription start site region 126978	1685 bp upstream
Tssr126979	transcription start site region 126979	1711 bp upstream
Tssr126980	transcription start site region 126980	1731 bp upstream
Tssr126981	transcription start site region 126981	1942 bp upstream
Tssr126982	transcription start site region 126982	1977 bp upstream
Tssr130073	transcription start site region 130073	792 bp upstream
Tssr130074	transcription start site region 130074	703 bp downstream
Tssr130075	transcription start site region 130075	748 bp downstream
Tssr130076	transcription start site region 130076	765 bp downstream
Tssr130077	transcription start site region 130077	1040 bp downstream
Tssr130078	transcription start site region 130078	1054 bp downstream
Tssr130079	transcription start site region 130079	1079 bp downstream