rs239432839 SNP Detail

Summary

• ID
  rs239432839
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83141393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATACCAT ACATGTAGGC
  AAAACACTCA TAAAATATAA ACCTTACAGA TTCTATAAAG GAAAAAAGGC AGAATGTAAG
  TCTCTATACT GTACTACCTA TTGCATAAGA GATGAAAGGA GTAGAACTCT GTGTTCATAA
  GAGCCTGTAT TTAAAACATC TACCAGATGA CCAAGAAACC AATTACCTGT AGCAAGCAAG
  R
  AGGTTATACT AGGGTGGGAC AAGGGCTAAA GGGAGGCTTC TCAGTACATA CTTTTCCAGG
  GGGCTTGAGA TGTGGTACTT TCTGTCAGCT TTCTCTGTAT GTCCCTGGAT GTCCTGGAAC
  TAGCTCTGTA GATCAAGCTG GCTAGTAGTC AGTGCTCTTA TCCACTGAGC CATCGCCGCA
  GCCCAATCCT GGCTATGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369025451	MGP_WTSI_6_83114405	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	G	A	A	A	G	G	G	G	A	A	A	G	A	A	G	G	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239432839					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	G	A	A	A	G	G	G	G	A	A	A	G	A	A	G	G	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369025451	MGP_WTSI_6_83114405	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83141393 () rs orientation: forward

Symbol	Name	Function Class
1700003E16Rik	RIKEN cDNA 1700003E16 gene	1466 bp downstream
Cpgi17594	CpG island 17594	1853 bp distal
Cpgi17595	CpG island 17595	1157 bp proximal
Dctn1	dynactin 1	1509 bp upstream
Gm15624	predicted gene 15624	1741 bp downstream
Rr399719	regulatory region 399719	1118 bp upstream
Rr632789	regulatory region 632789	1802 bp distal
Rr632790	regulatory region 632790	1394 bp distal
Rr632791	regulatory region 632791	1019 bp proximal
Rr632792	regulatory region 632792	1226 bp proximal
Rr632793	regulatory region 632793	1551 bp proximal
Tssr57316	transcription start site region 57316	1509 bp upstream