rs239435947 SNP Detail

Summary

• ID
  rs239435947
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8970067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAAGCTAC ATAGTGAGCT
  GGAGGCTAGG TTGCGATCAT GTCATAAAAC AAAAATAGAA AGGAAAAGAG AAAGAACGGG
  GAAGGGAAAT TGAGACTATG AATTAAAGAG GGGCTGGGAA GATAACTCAG TGGTTAAGAA
  CACTTGAGGA CCTGGGTTTG GTTCCGAGTA CCAACATGGA GGCTTACAAC CAGTCGTAAC
  R
  ACAGTTCCTG AGAATCCAAC ACCCTTTTCT GGCCTCCAGT GGGCACTTTA CCCACTGAGC
  CATCTCCTTA TGCCCAGTCC ATGTTCTTAA CAGACATATA TAGTATATTT TCATTAATAA
  ACTTCTAGCA TTGTCTACTG GCTTCAATTA TGGTAGGCAA AACACTCATA TACATAAAAC
  ACAGTCTTCT AAAAAACCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323886800	CHEV_12_8926873	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239435947					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8970067 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4400	CpG island 4400	1331 bp proximal
Gm60663	predicted gene, 60663	within coordinates
Rr403227	regulatory region 403227	1738 bp upstream
Rr462715	regulatory region 462715	1041 bp proximal
Rr462716	regulatory region 462716	1542 bp proximal
Rr462717	regulatory region 462717	1679 bp proximal
Rr462718	regulatory region 462718	1782 bp proximal
Tssr112751	transcription start site region 112751	1531 bp upstream
Tssr112752	transcription start site region 112752	1620 bp upstream
Tssr112753	transcription start site region 112753	1640 bp upstream
Tssr112754	transcription start site region 112754	1950 bp upstream
Tssr112755	transcription start site region 112755	1975 bp upstream
Tssr112756	transcription start site region 112756	1994 bp upstream
Tssr115725	transcription start site region 115725	1777 bp downstream