rs239436640 SNP Detail

Summary

• ID
  rs239436640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19240802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGACACCA CTACCCCCCA
  AAGCCTAAAT TCAGAAAGGC TCAACAAAAG AAAGCAAACC TCTGGCTTTG CCCAAGAGTA
  AAGCTGAATT TAGGAAACAG GACCAGAATG GATAGGGGCT AAGCTACTTG ATAGCCACAG
  AACCTGGGTT GGGGAGCCCG GAATTGTGCT AAGAATATCA AAGAAGATGC GAGGATTCGG
  Y
  TTCTGTCGGC ATTGATCAAA TGCTACCACG CATTGGAGGC CTCGGTGATC CAGGAACAAA
  AACAGAGTCA GATGCCACAG GTGGTACGAA TGTTCACCAA GAGGCAGAGT CAGGTGGGGG
  GACACAGAGT GACAGCCTAG GCTCTAGGTC CCGGGTCCTG CTCGGGCTCC ATACCAGGGA
  CCCCTCGTAT GTCCGGCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370750906	MGP_WTSI_7_20092226	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239436640					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370750906	MGP_WTSI_7_20092226	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19240802 () rs orientation: forward

Symbol	Name	Function Class
Bloc1s3	biogenesis of lysosomal organelles complex-1, subunit 3	within coordinates
Cpgi18495	CpG island 18495	within coordinates
Gm74038	predicted gene, 74038	521 bp upstream
Rr155319	regulatory region 155319	202 bp distal
Rr167175	regulatory region 167175	within coordinates
Rr400150	regulatory region 400150	1645 bp upstream
Trappc6a	trafficking protein particle complex 6A	1793 bp upstream
Tssr64863	transcription start site region 64863	443 bp upstream
Tssr64864	transcription start site region 64864	1837 bp upstream
Tssr64865	transcription start site region 64865	1866 bp upstream
Tssr64866	transcription start site region 64866	1883 bp upstream
Tssr70924	transcription start site region 70924	183 bp upstream
Tssr70925	transcription start site region 70925	1415 bp downstream
Tssr70926	transcription start site region 70926	1444 bp downstream
Tssr70927	transcription start site region 70927	1503 bp downstream